AImageLab publications export - 6 publications; search=#bioinformatics

Winkler, J., Urgese, G., Ficarra, E., & Reinert, K. (2022). LaRA 2: parallel and vectorized program for sequence–structure alignment of RNA sequences. BMC BIOINFORMATICS. https://doi.org/10.1186/s12859-021-04532-7

Simonetti, G., Padella, A., Do Valle, I. F., Fontana, M. C., Fonzi, E., Bruno, S., Baldazzi, C., Guadagnuolo, V., Manfrini, M., Ferrari, A., Paolini, S., Papayannidis, C., Marconi, G., Franchini, E., Zuffa, E., Laginestra, M. A., Zanotti, F., Astolfi, A., Iacobucci, I., ... Martinelli, G. (2019). Aneuploid acute myeloid leukemia exhibits a signature of genomic alterations in the cell cycle and protein degradation machinery. CANCER. https://doi.org/10.1002/cncr.31837

L’Abbate, A., Iacobucci, I., Lonoce, A., Turchiano, A., Ficarra, E., Paciello, G., Cattina, F., Ferrari, A., Imbrogno, E., Agostinelli, C., Zinzani, P., Martinelli, G., Derenzini, E., & Storlazzi, C. T. (2018). RALE051: a novel established cell line of sporadic Burkitt lymphoma. LEUKEMIA & LYMPHOMA. https://doi.org/10.1080/10428194.2017.1372580

Isella, C., Brundu, F. G., Bellomo, S. E., Galimi, F., Zanella, E., Consalvo Petti, R., Fiori, A., Orzan, F., Senetta, R., Boccaccio, C., Ficarra, E., Marchionni, L., Trusolino, L., Medico, E., & Bertotti, A. (2017). Selective analysis of cancer-cell intrinsic transcriptional traits defines novel clinically relevant subtypes of colorectal cancer. NATURE COMMUNICATIONS. https://doi.org/10.1038/ncomms15107

Natale, M., Benso, A., Di Carlo, S., & Ficarra, E. (2014). FunMod: A Cytoscape Plugin for Identifying Functional Modules in Undirected Protein–Protein Networks. GENOMICS, PROTEOMICS & BIOINFORMATICS. https://doi.org/10.1016/j.gpb.2014.05.002

Natale, M., Benso, A., Di Carlo, S., & Ficarra, E. (2014). Indentifying sub-network functional modules in protein undirected networks. BIOINFORMATICS 2014. https://iris.unimore.it/handle/11380/1240394