Publications

This paper provides a detailed description of how to install, set up, and use "BarBeR" (Barcode Benchmark Repository) to reproduce the results presented in the ICPR 2024 paper "BarBeR: A Barcode Benchmarking Repository". The paper details the tests available in the repository and how the configuration parameters affect and influence experimental results.

Since their invention in 1949, barcodes have remained the preferred method for automatic data capture, playing a crucial role in supply chain management. To detect a barcode in an image, multiple algorithms have been proposed in the literature, with a significant increase of interest in the topic since the rise of deep learning. However, research in the field suffers from many limitations, including the scarcity of public datasets and code implementations, which hampers the reproducibility and reliability of published results. For this reason, we developed "BarBeR" (Barcode Benchmark Repository), a benchmark designed for testing and comparing barcode detection algorithms. This benchmark includes the code implementation of various detection algorithms for barcodes, along with a suite of useful metrics. It offers a range of test setups and can be expanded to include any localization algorithm. In addition, we provide a large, annotated dataset of 8748 barcode images, combining multiple public barcode datasets with standardized annotation formats for both detection and segmentation tasks. Finally, we share the results obtained from running the benchmark on our dataset, offering valuable insights into the performance of different algorithms.

Transformer-based language models like BERT have revolutionized Natural Language Processing (NLP) research, but their application to historical languages remains underexplored. This paper investigates the adaptation of BERT-based embedding models for Latin, a language central to the study of the sacred texts of Christianity. Focusing on Jerome’s Vulgate, pre-Vulgate Latin translations of the Bible, and patristic commentaries such as Augustine’s De Genesi ad litteram, we address the challenges posed by Latin’s complex syntax, specialized vocabulary, and historical variations at the orthographic, morphological, and semantic levels. In particular, we propose fine-tuning existing BERT-based embedding models on annotated Latin corpora, using self-generated hard negatives to improve performance in detecting biblical references in early Christian literature in Latin. Experimental results demonstrate the ability of BERT-based models to identify citations of and allusions to the Bible(s) in ancient Christian commentaries while highlighting the complexities and challenges of this field. By integrating NLP techniques with humanistic expertise, this work provides a case study on intertextual analysis in Latin patristic works. It underscores the transformative potential of interdisciplinary approaches, advancing computational tools for sacred text studies and bridging the gap between philology and computational analysis.

We introduce Bits2Bites, the first publicly available dataset for occlusal classification from intra-oral scans, comprising 200 paired upper and lower dental arches annotated across multiple clinically relevant dimensions (sagittal, vertical, transverse, and midline relationships). Leveraging this resource, we propose a multi-task learning benchmark that jointly predicts five occlusal traits from raw 3D point clouds using state-of-the-art point-based neural architectures. Our approach includes extensive ablation studies assessing the benefits of multi-task learning against single-task baselines, as well as the impact of automatically-predicted anatomical landmarks as input features. Results demonstrate the feasibility of directly inferring comprehensive occlusion information from unstructured 3D data, achieving promising performance across all tasks. Our entire dataset, code, and pretrained models are publicly released to foster further research in automated orthodontic diagnosis.

Model merging has emerged as a crucial technique in Deep Learning, enabling the integration of multiple models into a unified system while preserving performance and scalability. In this respect, the compositional properties of low-rank adaptation techniques (e.g., LoRA) have proven beneficial, as simple averaging LoRA modules yields a single model that mostly integrates the capabilities of all individual modules. Building on LoRA, we take a step further by imposing that the merged model matches the responses of all learned modules. Solving this objective in closed form yields an indeterminate system with A and B as unknown variables, indicating the existence of infinitely many closed-form solutions. To address this challenge, we introduce LoRM, an alternating optimization strategy that trains one LoRA matrix at a time. This allows solving for each unknown variable individually, thus finding a unique solution. We apply our proposed methodology to Federated Class-Incremental Learning (FCIL), ensuring alignment of model responses both between clients and across tasks. Our method demonstrates state-of-the-art performance across a range of FCIL scenarios. The code to reproduce our experiments is available at this http URL.

Whole Slide Images (WSIs) are crucial in histological diagnostics, providing high-resolution insights into cellular structures. In addition to challenges like the gigapixel scale of WSIs and the lack of pixel-level annotations, privacy restrictions further complicate their analysis. For instance, in a hospital network, different facilities need to collaborate on WSI analysis without the possibility of sharing sensitive patient data. A more practical and secure approach involves sharing models capable of continual adaptation to new data. However, without proper measures, catastrophic forgetting can occur. Traditional continual learning techniques rely on storing previous data, which violates privacy restrictions. To address this issue, this paper introduces Context Optimization Multiple Instance Learning (CooMIL), a rehearsal-free continual learning framework explicitly designed for WSI analysis. It employs a WSI-specific prompt learning procedure to adapt classification models across tasks, efficiently preventing catastrophic forgetting. Evaluated on four public WSI datasets from TCGA projects, our model significantly outperforms state-of-the-art methods within the WSI-based continual learning framework. The source code is available at https://github.com/FrancescaMiccolis/CooMIL.